When you begin to develop actual applications, use the steps below to take advantage of the strengths of each Java component in your applications.
Use these resources for more information on designing web applications:
Designing Enterprise Applications with the J2EE Platform, Second Edition
This article provides architectural hints and best practices for designing J2EE applications. Note that this article contains information pertaining to enterprise beans, which are not supported by WebSphere Application Server - Express.
WebSphere Application Server - Express V5.0 Handbook
Chapter 2: Application design of this IBM Redbook provides modeling and design consideration for WebSphere Application Server - Express.